IL_4TUE_297

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4TUE|1|YA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_297 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.12

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4TUE|1|YA|C|1686
4TUE|1|YA|G|1687
4TUE|1|YA|U|1688
4TUE|1|YA|A|1689
4TUE|1|YA|A|1690
4TUE|1|YA|C|1691
*
4TUE|1|YA|G|1696
4TUE|1|YA|G|1697
4TUE|1|YA|A|1698
4TUE|1|YA|G|1699
4TUE|1|YA|A|1700
4TUE|1|YA|A|1701
4TUE|1|YA|G|1702

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2