IL_4TUE_353

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_353 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3344

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4TUE|1|XA|C|656
4TUE|1|XA|G|657
4TUE|1|XA|G|658
*
4TUE|1|XA|C|747
4TUE|1|XA|C|748
4TUE|1|XA|C|749
4TUE|1|XA|G|750

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XO

30S ribosomal protein S15