IL_4TUE_354

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_354 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4TUE|1|XA|G|673
4TUE|1|XA|G|674
4TUE|1|XA|A|675
4TUE|1|XA|A|676
4TUE|1|XA|U|677
*
4TUE|1|XA|G|713
4TUE|1|XA|G|714
4TUE|1|XA|A|715
4TUE|1|XA|A|716
4TUE|1|XA|C|717

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XK

30S ribosomal protein S11

Chain XR

30S ribosomal protein S18

Chain YD

50S ribosomal protein L2