IL_4TZP_015

3D structure

PDB id

4TZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein

Experimental method

X-RAY DIFFRACTION

Resolution

8.5 Å

Loop

Sequence

UGAUUAGCGAC*GGA

Length

14 nucleotides

Bulged bases

4TZP|1|F|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TZP_015 not in the Motif Atlas

Geometric match to IL_4LCK_009

Geometric discrepancy: 0.0425

The information below is about IL_4LCK_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80209.1

Basepair signature

cWW-cHW-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4TZP|1|F|U|37
4TZP|1|F|G|38
4TZP|1|F|A|39
4TZP|1|F|U|40
4TZP|1|F|U|41
4TZP|1|F|A|42
4TZP|1|F|G|43
4TZP|1|F|C|44
4TZP|1|F|G|45
4TZP|1|F|A|46
4TZP|1|F|C|47
*
4TZP|1|F|G|69
4TZP|1|F|G|70
4TZP|1|F|A|71

Current chains

Chain F

glyQ T-box Stem I

Nearby chains

Chain B

Transfer RNA; tRNA

Chain E

Transfer RNA; tRNA