IL_4TZW_002
3D structure
- PDB id
- 4TZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.67 Å
Loop
- Sequence
- GAAGAGUAU*AGAAGGCAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZW_002 not in the Motif Atlas
- Geometric match to IL_4LCK_007
- Geometric discrepancy: 0.1472
- The information below is about IL_4LCK_007
- Detailed Annotation
- 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_70670.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
4TZW|1|C|G|15
4TZW|1|C|A|16
4TZW|1|C|A|17
4TZW|1|C|G|18
4TZW|1|C|A|19
4TZW|1|C|G|20
4TZW|1|C|U|21
4TZW|1|C|A|22
4TZW|1|C|U|23
*
4TZW|1|C|A|83
4TZW|1|C|G|84
4TZW|1|C|A|85
4TZW|1|C|A|86
4TZW|1|C|G|87
4TZW|1|C|G|88
4TZW|1|C|C|89
4TZW|1|C|A|90
4TZW|1|C|C|91
Current chains
- Chain C
- T-box Stem I
Nearby chains
- Chain B
- Transfer RNA; tRNA
Coloring options: