IL_4TZW_008

3D structure

PDB id

4TZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization

Experimental method

X-RAY DIFFRACTION

Resolution

4.67 Å

Loop

Sequence

GAUUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TZW_008 not in the Motif Atlas

Geometric match to IL_7EL1_001

Geometric discrepancy: 0.3433

The information below is about IL_7EL1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4TZW|1|C|G|28
4TZW|1|C|A|29
4TZW|1|C|U|30
4TZW|1|C|U|31
4TZW|1|C|U|32
*
4TZW|1|C|A|76
4TZW|1|C|A|77
4TZW|1|C|C|78

Current chains

Chain C

T-box Stem I

Nearby chains

Chain B

Transfer RNA; tRNA