IL_4TZZ_017
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GAAGAGUAU*AGAAGGCAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZZ_017 not in the Motif Atlas
- Geometric match to IL_4LCK_007
- Geometric discrepancy: 0.175
- The information below is about IL_4LCK_007
- Detailed Annotation
- 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_70670.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
4TZZ|1|L|G|15
4TZZ|1|L|A|16
4TZZ|1|L|A|17
4TZZ|1|L|G|18
4TZZ|1|L|A|19
4TZZ|1|L|G|20
4TZZ|1|L|U|21
4TZZ|1|L|A|22
4TZZ|1|L|U|23
*
4TZZ|1|L|A|83
4TZZ|1|L|G|84
4TZZ|1|L|A|85
4TZZ|1|L|A|86
4TZZ|1|L|G|87
4TZZ|1|L|G|88
4TZZ|1|L|C|89
4TZZ|1|L|A|90
4TZZ|1|L|C|91
Current chains
- Chain L
- T-box Stem I RNA
Nearby chains
- Chain J
- Ribosome-associated protein L7Ae-like
- Chain K
- Transfer RNA; tRNA
Coloring options: