3D structure

PDB id
4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GAUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TZZ_018 not in the Motif Atlas
Geometric match to IL_4LCK_008
Geometric discrepancy: 0.2438
The information below is about IL_4LCK_008
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_79895.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

4TZZ|1|L|G|28
4TZZ|1|L|A|29
4TZZ|1|L|U|30
4TZZ|1|L|U|31
*
4TZZ|1|L|A|77
4TZZ|1|L|C|78

Current chains

Chain L
T-box Stem I RNA

Nearby chains

Chain K
Transfer RNA; tRNA

Coloring options:


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