IL_4TZZ_024
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UGAUUAGCGAC*GGA
- Length
- 14 nucleotides
- Bulged bases
- 4TZZ|1|C|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZZ_024 not in the Motif Atlas
- Geometric match to IL_4LCK_009
- Geometric discrepancy: 0.1309
- The information below is about IL_4LCK_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80209.1
- Basepair signature
- cWW-cHW-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
4TZZ|1|C|U|37
4TZZ|1|C|G|38
4TZZ|1|C|A|39
4TZZ|1|C|U|40
4TZZ|1|C|U|41
4TZZ|1|C|A|42
4TZZ|1|C|G|43
4TZZ|1|C|C|44
4TZZ|1|C|G|45
4TZZ|1|C|A|46
4TZZ|1|C|C|47
*
4TZZ|1|C|G|69
4TZZ|1|C|G|70
4TZZ|1|C|A|71
Current chains
- Chain C
- T-box Stem I RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain J
- Ribosome-associated protein L7Ae-like
- Chain L
- T-box leader
Coloring options: