IL_4U1U_020

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1416

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4U1U|1|AA|U|409
4U1U|1|AA|G|410
4U1U|1|AA|A|411
4U1U|1|AA|A|412
4U1U|1|AA|G|413
4U1U|1|AA|A|414
4U1U|1|AA|A|415
4U1U|1|AA|G|416
*
4U1U|1|AA|U|427
4U1U|1|AA|G|428
4U1U|1|AA|U|429
4U1U|1|AA|A|430
4U1U|1|AA|A|431
4U1U|1|AA|A|432
4U1U|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4