IL_4U1U_055

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_055 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0867

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4U1U|1|AA|C|1303
4U1U|1|AA|G|1304
4U1U|1|AA|G|1305
4U1U|1|AA|A|1306
4U1U|1|AA|U|1307
4U1U|1|AA|U|1308
*
4U1U|1|AA|A|1329
4U1U|1|AA|U|1330
4U1U|1|AA|G|1331
4U1U|1|AA|A|1332
4U1U|1|AA|A|1333
4U1U|1|AA|G|1334

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

30S ribosomal protein S13