IL_4U1U_216

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_216 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4U1U|1|CA|C|779
4U1U|1|CA|A|780
4U1U|1|CA|A|781
4U1U|1|CA|A|782
4U1U|1|CA|C|783
*
4U1U|1|CA|G|799
4U1U|1|CA|G|800
4U1U|1|CA|U|801
4U1U|1|CA|A|802
4U1U|1|CA|G|803

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain CU

30S ribosomal protein S21

Chain DA

Large subunit ribosomal RNA; LSU rRNA