IL_4U1U_245
3D structure
- PDB id
- 4U1U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to quinupristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U1U_245 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.0999
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U1U|1|DA|G|24
4U1U|1|DA|U|25
4U1U|1|DA|G|26
4U1U|1|DA|G|27
4U1U|1|DA|A|28
4U1U|1|DA|U|29
4U1U|1|DA|G|30
*
4U1U|1|DA|C|510
4U1U|1|DA|U|511
4U1U|1|DA|G|512
4U1U|1|DA|A|513
4U1U|1|DA|A|514
4U1U|1|DA|A|515
4U1U|1|DA|C|516
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DQ
- 50S ribosomal protein L20
- Chain DS
- 50S ribosomal protein L22
Coloring options: