IL_4U1U_250

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_250 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0893

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4U1U|1|DA|G|188
4U1U|1|DA|G|189
4U1U|1|DA|A|190
4U1U|1|DA|A|191
4U1U|1|DA|C|192
4U1U|1|DA|U|193
4U1U|1|DA|G|194
*
4U1U|1|DA|C|201
4U1U|1|DA|U|202
4U1U|1|DA|A|203
4U1U|1|DA|A|204
4U1U|1|DA|G|205
4U1U|1|DA|U|206
4U1U|1|DA|A|207
4U1U|1|DA|C|208

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28