IL_4U1U_255

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4U1U|1|DA|A|504, 4U1U|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_255 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0841

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4U1U|1|DA|G|481
4U1U|1|DA|A|482
4U1U|1|DA|A|483
4U1U|1|DA|C|484
*
4U1U|1|DA|G|496
4U1U|1|DA|A|497
4U1U|1|DA|G|498
4U1U|1|DA|U|499
4U1U|1|DA|G|500
4U1U|1|DA|A|501
4U1U|1|DA|A|502
4U1U|1|DA|A|503
4U1U|1|DA|A|504
4U1U|1|DA|A|505
4U1U|1|DA|G|506
4U1U|1|DA|A|507
4U1U|1|DA|A|508
4U1U|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24