3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
4U1V|1|AA|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_022 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.0857
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4U1V|1|AA|G|446
4U1V|1|AA|G|447
4U1V|1|AA|A|448
4U1V|1|AA|G|449
4U1V|1|AA|G|450
*
4U1V|1|AA|C|483
4U1V|1|AA|G|484
4U1V|1|AA|U|485
4U1V|1|AA|U|486
4U1V|1|AA|A|487
4U1V|1|AA|C|488

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AP
30S ribosomal protein S16

Coloring options:


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