IL_4U1V_115

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

4U1V|1|BA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_115 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1143

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4U1V|1|BA|C|1417
4U1V|1|BA|G|1418
4U1V|1|BA|A|1419
4U1V|1|BA|A|1420
4U1V|1|BA|G|1421
*
4U1V|1|BA|C|1577
4U1V|1|BA|U|1578
4U1V|1|BA|A|1579
4U1V|1|BA|A|1580
4U1V|1|BA|G|1581

Current chains

Chain BA

23S rRNA

Nearby chains