IL_4U1V_128

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4U1V|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_128 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0635

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4U1V|1|BA|C|1686
4U1V|1|BA|G|1687
4U1V|1|BA|U|1688
4U1V|1|BA|A|1689
4U1V|1|BA|A|1690
4U1V|1|BA|C|1691
*
4U1V|1|BA|G|1696
4U1V|1|BA|G|1697
4U1V|1|BA|A|1698
4U1V|1|BA|G|1699
4U1V|1|BA|A|1700
4U1V|1|BA|A|1701
4U1V|1|BA|G|1702

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2