3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACG*CUAU
Length
7 nucleotides
Bulged bases
4U1V|1|BA|C|2055, 4U1V|1|BA|U|2613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_141 not in the Motif Atlas
Homologous match to IL_5J7L_321
Geometric discrepancy: 0.1139
The information below is about IL_5J7L_321
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

4U1V|1|BA|A|2054
4U1V|1|BA|C|2055
4U1V|1|BA|G|2056
*
4U1V|1|BA|C|2612
4U1V|1|BA|U|2613
4U1V|1|BA|A|2614
4U1V|1|BA|U|2615

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BS
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0787 s