3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_145 not in the Motif Atlas
Homologous match to IL_5J7L_326
Geometric discrepancy: 0.1162
The information below is about IL_5J7L_326
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

4U1V|1|BA|U|2085
4U1V|1|BA|U|2086
4U1V|1|BA|G|2087
*
4U1V|1|BA|C|2232
4U1V|1|BA|U|2233
4U1V|1|BA|G|2234

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BC
50S ribosomal protein L2
Chain BX
50S ribosomal protein L28

Coloring options:


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