3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_151 not in the Motif Atlas
Homologous match to IL_5J7L_333
Geometric discrepancy: 0.0734
The information below is about IL_5J7L_333
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4U1V|1|BA|C|2350
4U1V|1|BA|G|2351
4U1V|1|BA|A|2352
4U1V|1|BA|G|2353
*
4U1V|1|BA|C|2364
4U1V|1|BA|G|2365
4U1V|1|BA|A|2366
4U1V|1|BA|G|2367

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B3
50S ribosomal protein L35
Chain BO
50S ribosomal protein L18
Chain BW
50S ribosomal protein L27

Coloring options:


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