IL_4U1V_197

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_197 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.089

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|CA|U|409
4U1V|1|CA|G|410
4U1V|1|CA|A|411
4U1V|1|CA|A|412
4U1V|1|CA|G|413
4U1V|1|CA|A|414
4U1V|1|CA|A|415
4U1V|1|CA|G|416
*
4U1V|1|CA|U|427
4U1V|1|CA|G|428
4U1V|1|CA|U|429
4U1V|1|CA|A|430
4U1V|1|CA|A|431
4U1V|1|CA|A|432
4U1V|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CD

30S ribosomal protein S4