3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UG*CAA
Length
5 nucleotides
Bulged bases
4U1V|1|CA|A|1196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_224 not in the Motif Atlas
Geometric match to IL_5J7L_049
Geometric discrepancy: 0.1367
The information below is about IL_5J7L_049
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

4U1V|1|CA|U|1060
4U1V|1|CA|G|1061
*
4U1V|1|CA|C|1195
4U1V|1|CA|A|1196
4U1V|1|CA|A|1197

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CE
30S ribosomal protein S5
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14

Coloring options:


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