3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAGC*GG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_227 not in the Motif Atlas
Homologous match to IL_5J7L_052
Geometric discrepancy: 0.2106
The information below is about IL_5J7L_052
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

4U1V|1|CA|C|1129
4U1V|1|CA|A|1130
4U1V|1|CA|G|1131
4U1V|1|CA|C|1132
*
4U1V|1|CA|G|1142
4U1V|1|CA|G|1143

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CI
30S ribosomal protein S9
Chain CJ
30S ribosomal protein S10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 3.1063 s