3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_231 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.2044
The information below is about IL_5J7L_056
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4U1V|1|CA|C|1259
4U1V|1|CA|G|1260
4U1V|1|CA|A|1261
4U1V|1|CA|C|1262
4U1V|1|CA|C|1263
*
4U1V|1|CA|G|1272
4U1V|1|CA|C|1273
4U1V|1|CA|A|1274
4U1V|1|CA|A|1275
4U1V|1|CA|G|1276

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CN
30S ribosomal protein S14

Coloring options:


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