IL_4U1V_250

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

4U1V|1|DA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_250 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2499

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|DA|C|274
4U1V|1|DA|C|275
4U1V|1|DA|U|276
4U1V|1|DA|G|277
4U1V|1|DA|A|278
4U1V|1|DA|A|279
4U1V|1|DA|U|280
4U1V|1|DA|C|281
*
4U1V|1|DA|G|359
4U1V|1|DA|U|360
4U1V|1|DA|G|361
4U1V|1|DA|A|362
4U1V|1|DA|G|363

Current chains

Chain DA

23S rRNA

Nearby chains