IL_4U1V_262

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4U1V|1|DA|A|788, 4U1V|1|DA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_262 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.1467

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4U1V|1|DA|G|775
4U1V|1|DA|G|776
4U1V|1|DA|G|777
*
4U1V|1|DA|C|787
4U1V|1|DA|A|788
4U1V|1|DA|A|789
4U1V|1|DA|U|790
4U1V|1|DA|C|791

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DS

50S ribosomal protein L22