3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GA*UGC
Length
5 nucleotides
Bulged bases
4U1V|1|DA|G|914
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_268 not in the Motif Atlas
Homologous match to IL_5J7L_271
Geometric discrepancy: 0.1038
The information below is about IL_5J7L_271
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

4U1V|1|DA|G|862
4U1V|1|DA|A|863
*
4U1V|1|DA|U|913
4U1V|1|DA|G|914
4U1V|1|DA|C|915

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DM
50S ribosomal protein L16
Chain DW
50S ribosomal protein L27

Coloring options:


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