IL_4U1V_326

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4U1V|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_326 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3599

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4U1V|1|DA|C|2129
4U1V|1|DA|U|2130
4U1V|1|DA|U|2131
4U1V|1|DA|U|2132
4U1V|1|DA|G|2133
4U1V|1|DA|A|2134
4U1V|1|DA|A|2135
4U1V|1|DA|G|2136
*
4U1V|1|DA|U|2155
4U1V|1|DA|G|2156
4U1V|1|DA|G|2157
4U1V|1|DA|A|2158
4U1V|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains