IL_4U1V_351

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_351 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.1338

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4U1V|1|DB|C|17
4U1V|1|DB|G|18
*
4U1V|1|DB|U|65
4U1V|1|DB|A|66
4U1V|1|DB|G|67

Current chains

Chain DB

5S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA