IL_4U1V_368

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUG

Length

33 nucleotides

Bulged bases

4U1V|1|BA|U|2111, 4U1V|1|BA|G|2116, 4U1V|1|BA|A|2117, 4U1V|1|BA|U|2118, 4U1V|1|BA|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U1V|1|BA|C|2103
4U1V|1|BA|C|2104
4U1V|1|BA|U|2105
4U1V|1|BA|U|2106
4U1V|1|BA|G|2107
4U1V|1|BA|A|2108
4U1V|1|BA|U|2109
4U1V|1|BA|G|2110
4U1V|1|BA|U|2111
4U1V|1|BA|G|2112
4U1V|1|BA|U|2113
4U1V|1|BA|A|2114
4U1V|1|BA|G|2115
4U1V|1|BA|G|2116
4U1V|1|BA|A|2117
4U1V|1|BA|U|2118
4U1V|1|BA|A|2119
4U1V|1|BA|G|2120
4U1V|1|BA|G|2121
4U1V|1|BA|U|2122
4U1V|1|BA|G|2123
*
4U1V|1|BA|C|2175
4U1V|1|BA|A|2176
4U1V|1|BA|C|2177
4U1V|1|BA|C|2178
4U1V|1|BA|C|2179
4U1V|1|BA|U|2180
4U1V|1|BA|U|2181
4U1V|1|BA|U|2182
4U1V|1|BA|A|2183
4U1V|1|BA|A|2184
4U1V|1|BA|U|2185
4U1V|1|BA|G|2186

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1