IL_4U1V_380

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_380 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2465

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

4U1V|1|DA|G|869
4U1V|1|DA|U|870
4U1V|1|DA|U|871
4U1V|1|DA|U|872
*
4U1V|1|DA|A|905
4U1V|1|DA|U|906
4U1V|1|DA|G|907
4U1V|1|DA|C|908

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16