IL_4U20_122

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U20_122 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3458

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4U20|1|BA|U|1474
4U20|1|BA|G|1475
4U20|1|BA|U|1476
4U20|1|BA|A|1477
4U20|1|BA|G|1478
4U20|1|BA|G|1479
*
4U20|1|BA|C|1512
4U20|1|BA|U|1513
4U20|1|BA|G|1514
4U20|1|BA|A|1515
4U20|1|BA|G|1516
4U20|1|BA|G|1517

Current chains

Chain BA

23S rRNA

Nearby chains