IL_4U24_191

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_191 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4U24|1|CA|U|409
4U24|1|CA|G|410
4U24|1|CA|A|411
4U24|1|CA|A|412
4U24|1|CA|G|413
4U24|1|CA|A|414
4U24|1|CA|A|415
4U24|1|CA|G|416
*
4U24|1|CA|U|427
4U24|1|CA|G|428
4U24|1|CA|U|429
4U24|1|CA|A|430
4U24|1|CA|A|431
4U24|1|CA|A|432
4U24|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CD

30S ribosomal protein S4