IL_4U24_313

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAGC*GUGGG

Length

9 nucleotides

Bulged bases

4U24|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_313 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.378

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4U24|1|DA|U|2081
4U24|1|DA|A|2082
4U24|1|DA|G|2083
4U24|1|DA|C|2084
*
4U24|1|DA|G|2235
4U24|1|DA|U|2236
4U24|1|DA|G|2237
4U24|1|DA|G|2238
4U24|1|DA|G|2239

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28