IL_4U24_341

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

4U24|1|DA|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_341 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1463

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4U24|1|DA|G|2843
4U24|1|DA|G|2844
4U24|1|DA|U|2845
4U24|1|DA|G|2846
*
4U24|1|DA|C|2870
4U24|1|DA|U|2871
4U24|1|DA|A|2872
4U24|1|DA|A|2873
4U24|1|DA|C|2874

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19