IL_4U24_350

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUGC*GCCC

Length

9 nucleotides

Bulged bases

4U24|1|AA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_350 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2736

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4U24|1|AA|G|1047
4U24|1|AA|G|1048
4U24|1|AA|U|1049
4U24|1|AA|G|1050
4U24|1|AA|C|1051
*
4U24|1|AA|G|1207
4U24|1|AA|C|1208
4U24|1|AA|C|1209
4U24|1|AA|C|1210

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14