IL_4U24_360

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUGAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUUGAUG

Length

47 nucleotides

Bulged bases

4U24|1|BA|U|2111, 4U24|1|BA|G|2112, 4U24|1|BA|U|2113, 4U24|1|BA|A|2114, 4U24|1|BA|G|2115, 4U24|1|BA|G|2116, 4U24|1|BA|A|2117, 4U24|1|BA|U|2118, 4U24|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|BA|C|2096
4U24|1|BA|A|2097
4U24|1|BA|U|2098
4U24|1|BA|U|2099
4U24|1|BA|G|2100
4U24|1|BA|A|2101
4U24|1|BA|G|2102
4U24|1|BA|C|2103
4U24|1|BA|C|2104
4U24|1|BA|U|2105
4U24|1|BA|U|2106
4U24|1|BA|G|2107
4U24|1|BA|A|2108
4U24|1|BA|U|2109
4U24|1|BA|G|2110
4U24|1|BA|U|2111
4U24|1|BA|G|2112
4U24|1|BA|U|2113
4U24|1|BA|A|2114
4U24|1|BA|G|2115
4U24|1|BA|G|2116
4U24|1|BA|A|2117
4U24|1|BA|U|2118
4U24|1|BA|A|2119
4U24|1|BA|G|2120
4U24|1|BA|G|2121
4U24|1|BA|U|2122
4U24|1|BA|G|2123
*
4U24|1|BA|C|2175
4U24|1|BA|A|2176
4U24|1|BA|C|2177
4U24|1|BA|C|2178
4U24|1|BA|C|2179
4U24|1|BA|U|2180
4U24|1|BA|U|2181
4U24|1|BA|U|2182
4U24|1|BA|A|2183
4U24|1|BA|A|2184
4U24|1|BA|U|2185
4U24|1|BA|G|2186
4U24|1|BA|U|2187
4U24|1|BA|U|2188
4U24|1|BA|U|2189
4U24|1|BA|G|2190
4U24|1|BA|A|2191
4U24|1|BA|U|2192
4U24|1|BA|G|2193

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BH

50S ribosomal protein L9

Chain CA

Small subunit ribosomal RNA; SSU rRNA