IL_4U24_364

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUAAUUCGAUGCAACGCGAAGAACCUUAC*GGCUA

Length

35 nucleotides

Bulged bases

4U24|1|CA|G|971, 4U24|1|CA|A|975, 4U24|1|CA|G|976, 4U24|1|CA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|CA|U|955
4U24|1|CA|U|956
4U24|1|CA|U|957
4U24|1|CA|A|958
4U24|1|CA|A|959
4U24|1|CA|U|960
4U24|1|CA|U|961
4U24|1|CA|C|962
4U24|1|CA|G|963
4U24|1|CA|A|964
4U24|1|CA|U|965
4U24|1|CA|G|966
4U24|1|CA|C|967
4U24|1|CA|A|968
4U24|1|CA|A|969
4U24|1|CA|C|970
4U24|1|CA|G|971
4U24|1|CA|C|972
4U24|1|CA|G|973
4U24|1|CA|A|974
4U24|1|CA|A|975
4U24|1|CA|G|976
4U24|1|CA|A|977
4U24|1|CA|A|978
4U24|1|CA|C|979
4U24|1|CA|C|980
4U24|1|CA|U|981
4U24|1|CA|U|982
4U24|1|CA|A|983
4U24|1|CA|C|984
*
4U24|1|CA|G|1221
4U24|1|CA|G|1222
4U24|1|CA|C|1223
4U24|1|CA|U|1224
4U24|1|CA|A|1225

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CM

30S ribosomal protein S13

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19