IL_4U24_371

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4U24|1|DA|A|504, 4U24|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_371 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.1366

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4U24|1|DA|G|481
4U24|1|DA|A|482
4U24|1|DA|A|483
4U24|1|DA|C|484
*
4U24|1|DA|G|496
4U24|1|DA|A|497
4U24|1|DA|G|498
4U24|1|DA|U|499
4U24|1|DA|G|500
4U24|1|DA|A|501
4U24|1|DA|A|502
4U24|1|DA|A|503
4U24|1|DA|A|504
4U24|1|DA|A|505
4U24|1|DA|G|506
4U24|1|DA|A|507
4U24|1|DA|A|508
4U24|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24