IL_4U24_382

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

4U24|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_382 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.402

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4U24|1|DA|G|2123
4U24|1|DA|G|2124
4U24|1|DA|G|2125
4U24|1|DA|A|2126
4U24|1|DA|G|2127
4U24|1|DA|G|2128
*
4U24|1|DA|C|2160
4U24|1|DA|C|2161
4U24|1|DA|G|2162
4U24|1|DA|A|2163
4U24|1|DA|C|2164
4U24|1|DA|C|2165
4U24|1|DA|U|2166
4U24|1|DA|U|2167
4U24|1|DA|G|2168
4U24|1|DA|A|2169
4U24|1|DA|A|2170
4U24|1|DA|A|2171
4U24|1|DA|U|2172
4U24|1|DA|A|2173
4U24|1|DA|C|2174
4U24|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains