IL_4U25_024

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_024 not in the Motif Atlas

Geometric match to IL_4M4O_002

Geometric discrepancy: 0.1573

The information below is about IL_4M4O_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4U25|1|AA|G|453
4U25|1|AA|G|454
4U25|1|AA|G|455
*
4U25|1|AA|C|477
4U25|1|AA|A|478
4U25|1|AA|U|479

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16