IL_4U25_025

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_025 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0636

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4U25|1|AA|C|504
4U25|1|AA|G|505
4U25|1|AA|G|506
4U25|1|AA|C|507
4U25|1|AA|U|508
4U25|1|AA|A|509
4U25|1|AA|A|510
4U25|1|AA|C|511
*
4U25|1|AA|G|540
4U25|1|AA|G|541

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12