3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_077 not in the Motif Atlas
Homologous match to IL_5J7L_256
Geometric discrepancy: 0.0701
The information below is about IL_5J7L_256
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4U25|1|BA|G|536
4U25|1|BA|G|537
4U25|1|BA|A|538
4U25|1|BA|G|539
*
4U25|1|BA|U|554
4U25|1|BA|G|555
4U25|1|BA|A|556
4U25|1|BA|C|557

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BJ
50S ribosomal protein L13
Chain BQ
50S ribosomal protein L20

Coloring options:


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