IL_4U25_094

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_094 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1208

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4U25|1|BA|G|875
4U25|1|BA|C|876
4U25|1|BA|A|877
4U25|1|BA|A|878
4U25|1|BA|G|879
*
4U25|1|BA|C|898
4U25|1|BA|A|899
4U25|1|BA|A|900
4U25|1|BA|C|901
4U25|1|BA|C|902

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L16