IL_4U25_106
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAA*UC
- Length
- 6 nucleotides
- Bulged bases
- 4U25|1|BA|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_106 not in the Motif Atlas
- Homologous match to IL_5J7L_385
- Geometric discrepancy: 0.567
- The information below is about IL_5J7L_385
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.6
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
4U25|1|BA|G|1087
4U25|1|BA|A|1088
4U25|1|BA|A|1089
4U25|1|BA|A|1090
*
4U25|1|BA|U|1101
4U25|1|BA|C|1102
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B4
- 50S ribosomal protein L36
- Chain BI
- 50S ribosomal protein L11
Coloring options: