IL_4U25_114

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_114 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4U25|1|BA|C|1357
4U25|1|BA|G|1358
4U25|1|BA|A|1359
4U25|1|BA|G|1360
4U25|1|BA|G|1361
*
4U25|1|BA|C|1370
4U25|1|BA|G|1371
4U25|1|BA|U|1372
4U25|1|BA|A|1373
4U25|1|BA|G|1374

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2