IL_4U25_141

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4U25|1|BA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_141 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.054

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4U25|1|BA|A|2070
4U25|1|BA|A|2071
*
4U25|1|BA|U|2438
4U25|1|BA|A|2439
4U25|1|BA|C|2440
4U25|1|BA|U|2441

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2