IL_4U25_144

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

4U25|1|BA|A|2126, 4U25|1|BA|C|2165, 4U25|1|BA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|G|2124
4U25|1|BA|G|2125
4U25|1|BA|A|2126
4U25|1|BA|G|2127
*
4U25|1|BA|C|2161
4U25|1|BA|G|2162
4U25|1|BA|A|2163
4U25|1|BA|C|2164
4U25|1|BA|C|2165
4U25|1|BA|U|2166
4U25|1|BA|U|2167
4U25|1|BA|G|2168
4U25|1|BA|A|2169
4U25|1|BA|A|2170
4U25|1|BA|A|2171
4U25|1|BA|U|2172
4U25|1|BA|A|2173
4U25|1|BA|C|2174

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1