3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUC*GG
Length
5 nucleotides
Bulged bases
4U25|1|BA|U|2402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_148 not in the Motif Atlas
Geometric match to IL_5LYS_008
Geometric discrepancy: 0.3769
The information below is about IL_5LYS_008
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

4U25|1|BA|U|2401
4U25|1|BA|U|2402
4U25|1|BA|C|2403
*
4U25|1|BA|G|2414
4U25|1|BA|G|2415

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B1
50S ribosomal protein L33
Chain B3
50S ribosomal protein L35
Chain BL
50S ribosomal protein L15

Coloring options:


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